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Posted by / 08-Sep-2017 08:59

This means that any direct edits to the affected sections of will be discarded.

Once you save a new definition to mascot.dat, Mascot Monitor will look to see if there is a Fasta file that matches the wild card path.

When Database Manager is used, it stores configuration information in a number of XML files and is dynamically re-written whenever a change is saved.

Otherwise, Database Manager is a much easier and more reliable option. This is the name that will appear in the drop-down list in the search form, so don’t write an essay. Allowed characters are alphanumerics and The recommended arrangement is to have a dedicated directory for each database. The incoming directory provides a workspace for downloading and processing a new database file.

The current directory contains the active database, and this is where Mascot Monitor creates the compressed files that will be memory mapped.

If the database is not described in one of the Mascot help pages, make careful notes of which files are required, where they come from, and any processing that is required.

Mascot can search any Fasta format sequence database. Each entry consists of a one line title followed by one or more lines containing the sequence data in 1 letter code.

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Configuration information for sequence databases and associated files is stored in the general configuration file,